I did the front windshield on my Mustang a couple years ago. You have correct ideas.
I went and obtained one of the black mastic tubes from auto body shop. It mounts in standard painter's squeeze gun. Put the mastic down into groove before installing the seal onto windshield. I found it took about 1/8" dia hole off the tip to get proper amount down in there. Also found it takes about one whole tube to do the windshield so don't get beyond 1/2 and half.
After mounting the seal onto the windshield the body groove gets the remainder of the tube. Now, before getting this far, the headliner is tucked under the upper of the seal. So make sure it is stuck tight for your maneuvering will unhindge it there.
Next, I got the rope in there, but the crossover point was near the lower corner by driver's position. I jambed the windshield and seal into that corner, then pushed like hell on them both. Then go vertical in pulling out the rope. Hold things in place still, for if it pops out, you have to start over.
Once you get the rope pulled out, and seal popped in along vertical portion of driver's side then keep pulling and go across the top edge. Watch that the headliner does not pop out, and keep a constant push towards the driver's side, for once the rope gets pulled off in the vicinity of the passenger post, it is too late to try and shift the heavy piece of glass over again. Once you head down the passenger post, you are pretty well free then.
I used some very weak mineral paint thinner to sop up the excess black goo.
Oh, and I tried that silicone stuff you get from Home Depot in a $4 tube, and it swells up everything before the glass and seal is installed. Yes, the black is more expensive, but works better too.
Wm.